Understanding Autoimmune Conditions Through a Functional Medicine Lens
Autoimmune diseases are some of the most common—and most misunderstood—chronic health issues we see at Schoenwalder Health and Wellness. With more than 80 known autoimmune conditions and millions of Americans affected, these disorders occur when the body’s immune system mistakenly attacks its own tissues, leading to a wide range of symptoms that can affect nearly any organ or system.
In our functional medicine practice, we don’t just manage symptoms. We work to uncover the root causes of autoimmunity and help patients restore balance, build resilience, and regain control over their health.
What Is an Autoimmune Disease?
In a healthy immune system, the body can distinguish between its own cells and foreign invaders like bacteria or viruses. But in autoimmune conditions, that recognition system breaks down. The result is chronic inflammation and tissue damage as the immune system targets joints, glands, skin, the digestive tract, or even the nervous system.
Common autoimmune conditions include:
- Hashimoto’s thyroiditis
- Rheumatoid arthritis
- Lupus (SLE)
- Psoriasis and psoriatic arthritis
- Celiac disease
- Multiple sclerosis
- Sjögren’s syndrome
- Inflammatory bowel disease (Crohn’s, ulcerative colitis)
- Type 1 diabetes
Symptoms can vary widely depending on the system involved but often include fatigue, joint pain, brain fog, digestive issues, skin rashes, hair loss, and mood changes.
A Functional Approach to Autoimmunity
In conventional medicine, treatment often centers around immune-suppressing drugs. While these medications can be important, they don’t address the question of why the immune system went off track in the first place.
At Schoenwalder Health and Wellness, we take a more comprehensive approach by asking:
- What environmental or lifestyle factors are triggering the immune response?
- Is there increased intestinal permeability (“leaky gut”) contributing to systemic inflammation?
- Are chronic infections, toxins, or mold exposures involved?
- Is stress, nutrient deficiency, or hormone imbalance playing a role?
Our Autoimmune Care Strategy
We use personalized testing and detailed patient histories to uncover the unique factors driving each individual’s condition. Treatment plans may include:
- Targeted dietary changes to reduce inflammation and support gut health
- Restoring nutrient levels, including vitamin D, omega-3s, and antioxidants
- Hormonal balancing, especially for thyroid and adrenal function
- Addressing infections such as Epstein-Barr virus, H. pylori, or gut dysbiosis
- Reducing toxic burden through gentle detox strategies
- Stress resilience support with mindfulness, and nervous system regulation
- Bio-identical hormone replacement therapy when clinically appropriate
- Ongoing monitoring to reduce flares and improve quality of life
Our goal is not just to manage autoimmunity—it’s to help our patients live more fully with strength, energy, and confidence in their care.
If you’ve been diagnosed with an autoimmune condition and are tired of feeling dismissed or stuck, we invite you to explore a more comprehensive, root-cause approach. You deserve care that looks at the whole picture.
The information on this page is for educational purposes only and is not intended to diagnose, treat, cure, or prevent any disease. Individual results may vary, and all treatments should be discussed with a qualified healthcare provider.
Sources:
- Fasano A. “Leaky Gut and Autoimmune Diseases.” Clin Rev Allergy Immunol. 2012.
- The Institute for Functional Medicine: Autoimmune Disease Clinical Guidelines
- Shoenfeld Y. Autoimmunity: From Bench to Bedside.

